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isosurface function  (Amira Pharmaceuticals)

 
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    Amira Pharmaceuticals isosurface function
    Isosurface Function, supplied by Amira Pharmaceuticals, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/isosurface+function/function+isosurface/pm41346132-224-19-23
    Average 86 stars, based on 1 article reviews
    isosurface function - by Bioz Stars, 2026-11
    86/100 stars

    Images

    Related Articles

    Imaging:

    Article Title: Temporal bone characterization and cochlear implant feasibility in the common marmoset (Callithrix jacchus)
    Article Snippet: .. Whole specimen reconstructions were created using the Isosurface function in the Amira software program, which creates a surface based on a user defined pixel value threshold. fig ft0 fig mode=article f1 Fig. 1 caption a4 MicroCT imaging of the marmoset temporal bone. (a) Specimens were imaged using high resolution X-ray computed tomography (microCT) with cubic voxel size ranging from 12–20 μm per side. .. Amira software was used to view the image stack in ... 2.2.1.

    Computed Tomography:

    Article Title: Temporal bone characterization and cochlear implant feasibility in the common marmoset (Callithrix jacchus)
    Article Snippet: .. Whole specimen reconstructions were created using the Isosurface function in the Amira software program, which creates a surface based on a user defined pixel value threshold. fig ft0 fig mode=article f1 Fig. 1 caption a4 MicroCT imaging of the marmoset temporal bone. (a) Specimens were imaged using high resolution X-ray computed tomography (microCT) with cubic voxel size ranging from 12–20 μm per side. .. Amira software was used to view the image stack in ... 2.2.1.

    other:

    Article Title: 3D Reconstruction and Standardization of the Rat Facial Nucleus for Precise Mapping of Vibrissal Motor Networks
    Article Snippet: Then, we approximated the volume around the C-row somata by calculating a surface around 90% of the soma density distribution (i.e. using the ‘ IsoSurface ’ function in Amira with a threshold of 10% of the maximum density value and enabling the ‘ compactify ’ option).

    Article Title: Growth and microanatomy of the paranasal sinuses in two species of New World monkeys.
    Article Snippet: School of Physical Therapy, Slippery Rock University, Slippery Rock, Pennsylvania, USA The Russel H. Morgan Departments of Radiology, The Johns Hopkins Medical Institutions, Baltimore, Maryland, USA Department of Cell Biology, SUNY Downstate Health Sciences University, Brooklyn, New York, USA Department of Otolaryngology, SUNY Downstate Health Sciences University, Brooklyn, New York, USA Dumond Conservancy, Miami, Florida, USA Department of Anthropology, University of Florida, Gainesville, Florida, USA

    Article Title: Multi-method analysis for the three-dimensional reconstruction of muscle fascicles from DiceCT datasets.
    Article Snippet: To this end, we found that an optimal Minimum Seed Correlation value could be approximated through use of the Isosurface function (native to Amira, rather than XFiber specifically).



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    Microcolonies architecture in GSFM (▴) or S-GSFM (●), after 96h at 25°C. A : Macroscopic images are obtained using an automated robot that integrates incubation and high-resolution imaging. Microscopic observations of microcolonies, endpoint stained with the cell-permeant nucleic acid dye Syto 61, are obtained with confocal laser scanning microscopy. Representative pictures correspond to the microcolonies <t>isosurface</t> after fluorescence segmentation using the Imaris isosurface functions. B : Quantitative parameters extracted from the isosurface of microcolonies in Imaris software. Each point represents an independent replicate (n=9), bars correspond to the mean of volume of microcolonies log 10 (µm 3 ) and sphericity (A.U.). A two-way ANOVA was performed to assess the effect of food stress. When a significant effect of the environment was detected, the Bonferroni multiple comparisons test was applied to evaluate the level of significance. Asterisks indicate significant differences between environments (p<0.05).
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    Image Search Results


    Microcolonies architecture in GSFM (▴) or S-GSFM (●), after 96h at 25°C. A : Macroscopic images are obtained using an automated robot that integrates incubation and high-resolution imaging. Microscopic observations of microcolonies, endpoint stained with the cell-permeant nucleic acid dye Syto 61, are obtained with confocal laser scanning microscopy. Representative pictures correspond to the microcolonies isosurface after fluorescence segmentation using the Imaris isosurface functions. B : Quantitative parameters extracted from the isosurface of microcolonies in Imaris software. Each point represents an independent replicate (n=9), bars correspond to the mean of volume of microcolonies log 10 (µm 3 ) and sphericity (A.U.). A two-way ANOVA was performed to assess the effect of food stress. When a significant effect of the environment was detected, the Bonferroni multiple comparisons test was applied to evaluate the level of significance. Asterisks indicate significant differences between environments (p<0.05).

    Journal: bioRxiv

    Article Title: Spatial growth in food-like matrices differentially modulates food-related stress responses but enhances digestive tolerance in major foodborne pathogens

    doi: 10.64898/2026.03.05.710002

    Figure Lengend Snippet: Microcolonies architecture in GSFM (▴) or S-GSFM (●), after 96h at 25°C. A : Macroscopic images are obtained using an automated robot that integrates incubation and high-resolution imaging. Microscopic observations of microcolonies, endpoint stained with the cell-permeant nucleic acid dye Syto 61, are obtained with confocal laser scanning microscopy. Representative pictures correspond to the microcolonies isosurface after fluorescence segmentation using the Imaris isosurface functions. B : Quantitative parameters extracted from the isosurface of microcolonies in Imaris software. Each point represents an independent replicate (n=9), bars correspond to the mean of volume of microcolonies log 10 (µm 3 ) and sphericity (A.U.). A two-way ANOVA was performed to assess the effect of food stress. When a significant effect of the environment was detected, the Bonferroni multiple comparisons test was applied to evaluate the level of significance. Asterisks indicate significant differences between environments (p<0.05).

    Article Snippet: Raw fluorescence of each image was then binarised using the automated Imaris isosurface function.

    Techniques: Incubation, Imaging, Staining, Confocal Laser Scanning Microscopy, Fluorescence, Software